Table 2.

De novo assembly of the W303-K6001 genome.

de novo assembly by SOAPdenovo 63merde novo assembly by Newbler v. 2.6combination of reference-guided and de novo assembly by Newbler v. 2.6
assembled dataIllumina454Illumina + 454454 + 454 mapped contigs
contig statistics
number of contigs30954772846375
number of bases11 819 87311 637 89213 865 03211 642 694
average contig size381924 398487131 047
N50 contig size39 71766 53142 713149 943
largest contig size165 547260 577164 236466 025
scaffold statistics
number of scaffolds37435778
number of bases11 351 82411 856 22611 591 176
average scaffold size30 35233 210148 604
N50 scaffold size68 612102 849367 966
largest scaffold size226 549386 246833 844